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│Report on FMDV O in South Korea in 2010 │
│VP1 sequence received from National Veterinary │
│Research and Quarantine Service, Anyang, Gyeonggi │
│430-824, Republic of Korea. │
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Software: MEGA 4.0
No. of Taxa: 239
Data File : n:\evd\meg\db\fmdv\o\SKR2010a.meg
Data Title : O South Korea 2010
Data Type : Nucleotide (Coding)
Analysis : Phylogeny reconstruction
Tree Inference : ==============================
->Method : Neighbor-Joining
->Phylogeny Test and options : Bootstrap (1000 replicates; seed=64238)
Include Sites : ==============================
->Gaps/Missing Data : PairwiseDeletion
->CodonPositions : 1st+2nd+3rd+Noncoding
Substitution Model : ==============================
->Model : Nucleotide: Kimura 2-parameter
->Substitutions to Include : d: Transitions + Transversions
->Pattern among Lineages : Same (Homogeneous)
->Rates among sites : Uniform rates
No. of Sites : 639
No Of Bootstrap Reps = 1000 Only bootstrap values of 70% and above are shown
*, not a WRLFMD Ref. No.
N.J. Knowles, F.Hamid& J. Wadsworth, 12 April 2010