11/01/10 10:51:33
Report on FMDV O in Japan in 2010
VP1 sequence received from the National Institute for Animal Health, Tokyo, Japan, on 27/04/2010
Software: MEGA 4.0
No. of Taxa: 241
Data File : n:\evd\meg\db\fmdv\o\JPN2010a.meg
Data Title : O Japan 2010
Data Type : Nucleotide (Coding)
Analysis : Phylogeny reconstruction
Tree Inference : ==============================
->Method : Neighbor-Joining
->Phylogeny Test and options : Bootstrap (1000 replicates; seed=64843)
Include Sites : ==============================
->Gaps/Missing Data : PairwiseDeletion
->CodonPositions : 1st+2nd+3rd+Noncoding
Substitution Model : ==============================
->Model : Nucleotide: Kimura 2-parameter
->Substitutions to Include : d: Transitions + Transversions
->Pattern among Lineages : Same (Homogeneous)
->Rates among sites : Uniform rates
No. of Sites : 639
No Of Bootstrap Reps = 1000
Only bootstrap values of 70% and above are shown
*, not a WRLFMD Ref. No.
N.J. Knowles, J. Wadsworth & F. Hamid, 5 May 2010